Datasetchrom
PhenotypeNoPhenotypeAvailable
Upregulated in classna_pos
GeneSetREACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT
Enrichment Score (ES)0.6218272
Normalized Enrichment Score (NES)2.4524662
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1NDUFA4NDUFA4
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa93.4470.0330Yes
2NDUFS4NDUFS4
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)123.1940.0655Yes
3NDUFA6NDUFA6
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa232.8430.0919Yes
4NDUFS6NDUFS6
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)252.8040.1206Yes
5NDUFV2NDUFV2
Entrez,  Source
NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa392.5360.1430Yes
6NDUFA7NDUFA7
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa402.5250.1691Yes
7COX6B1COX6B1
Entrez,  Source
cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)432.4960.1943Yes
8NDUFA2NDUFA2
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa442.4440.2197Yes
9NDUFB7NDUFB7
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa462.4230.2444Yes
10NDUFA12NDUFA12
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12492.4110.2688Yes
11NDUFS1NDUFS1
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)532.3970.2927Yes
12NDUFA10NDUFA10
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa542.3840.3174Yes
13COX5BCOX5B
Entrez,  Source
cytochrome c oxidase subunit Vb552.3810.3421Yes
14NDUFB9NDUFB9
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa602.3050.3647Yes
15NDUFB1NDUFB1
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa712.2190.3847Yes
16NDUFB8NDUFB8
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa932.0880.4000Yes
17NDUFB6NDUFB6
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa1002.0650.4196Yes
18NDUFV1NDUFV1
Entrez,  Source
NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa1082.0330.4385Yes
19BSGBSG
Entrez,  Source
basigin (Ok blood group)1151.9920.4573Yes
20NDUFS5NDUFS5
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)1211.9130.4756Yes
21NDUFB3NDUFB3
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa1271.8660.4934Yes
22NDUFA3NDUFA3
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa1361.7830.5095Yes
23UQCRC2UQCRC2
Entrez,  Source
ubiquinol-cytochrome c reductase core protein II1401.7750.5270Yes
24NDUFV3NDUFV3
Entrez,  Source
NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa1901.5700.5285Yes
25NDUFA9NDUFA9
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa1971.5250.5424Yes
26NDUFB4NDUFB4
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa2121.4890.5536Yes
27NDUFS3NDUFS3
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)2141.4820.5687Yes
28COX6CCOX6C
Entrez,  Source
cytochrome c oxidase subunit VIc2301.4300.5790Yes
29DLDDLD
Entrez,  Source
dihydrolipoamide dehydrogenase2451.3970.5892Yes
30COX7A2LCOX7A2L
Entrez,  Source
cytochrome c oxidase subunit VIIa polypeptide 2 like2701.3480.5960Yes
31NDUFC2NDUFC2
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa2731.3450.6093Yes
32LDHALDHA
Entrez,  Source
lactate dehydrogenase A3031.2580.6136Yes
33UQCRC1UQCRC1
Entrez,  Source
ubiquinol-cytochrome c reductase core protein I3201.2210.6214Yes
34NDUFB5NDUFB5
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa3591.1480.6218Yes
35NDUFB10NDUFB10
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa4540.9960.6038No
36NDUFS8NDUFS8
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)4670.9840.6104No
37PDHXPDHX
Entrez,  Source
pyruvate dehydrogenase complex, component X4700.9810.6200No
38NDUFA11NDUFA11
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa5330.9100.6107No
39UQCRFS1UQCRFS1
Entrez,  Source
ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 15400.9070.6183No
40PDK3PDK3
Entrez,  Source
pyruvate dehydrogenase kinase, isozyme 35640.8770.6204No
41UQCRBUQCRB
Entrez,  Source
ubiquinol-cytochrome c reductase binding protein7260.7160.5793No
42NDUFS7NDUFS7
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)7380.7040.5833No
43UQCRQUQCRQ
Entrez,  Source
ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa7930.6610.5739No
44FHFH
Entrez,  Source
fumarate hydratase8350.6290.5681No
45NDUFS2NDUFS2
Entrez,  Source
NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)8430.6200.5724No
46ATP5C1ATP5C1
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 19270.5620.5532No
47NDUFA13NDUFA13
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 139310.5610.5581No
48CYC1CYC1
Entrez,  Source
cytochrome c-19430.5560.5606No
49OGDHOGDH
Entrez,  Source
oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)9670.5400.5592No
50NDUFA8NDUFA8
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa9810.5340.5608No
51SDHBSDHB
Entrez,  Source
succinate dehydrogenase complex, subunit B, iron sulfur (Ip)9830.5320.5660No
52COX4I1COX4I1
Entrez,  Source
cytochrome c oxidase subunit IV isoform 110380.5040.5550No
53NDUFA5NDUFA5
Entrez,  Source
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa10850.4710.5460No
54ATP5LATP5L
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G11660.4200.5263No
55ETFDHETFDH
Entrez,  Source
electron-transferring-flavoprotein dehydrogenase11670.4190.5306No
56ATP5F1ATP5F1
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B111880.4090.5288No
57ATP5J2ATP5J2
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F212170.3990.5245No
58ATP5OATP5O
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein)13870.2910.4766No
59ATP5BATP5B
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide13960.2830.4771No
60ATP5HATP5H
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d14730.2330.4567No
61ATP5A1ATP5A1
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle15260.1930.4430No
62ATP5JATP5J
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F615480.1840.4386No
63PDHBPDHB
Entrez,  Source
pyruvate dehydrogenase (lipoamide) beta16140.1430.4205No
64IDH2IDH2
Entrez,  Source
isocitrate dehydrogenase 2 (NADP+), mitochondrial16270.1310.4182No
65COX5ACOX5A
Entrez,  Source
cytochrome c oxidase subunit Va16610.1140.4095No
66ATP5DATP5D
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit17900.0370.3713No
67ETFBETFB
Entrez,  Source
electron-transfer-flavoprotein, beta polypeptide1924-0.0550.3318No
68DLSTDLST
Entrez,  Source
dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)2059-0.1530.2930No
69DLATDLAT
Entrez,  Source
dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)2060-0.1530.2946No
70MDH2MDH2
Entrez,  Source
malate dehydrogenase 2, NAD (mitochondrial)2076-0.1610.2917No
71PDHA1PDHA1
Entrez,  Source
pyruvate dehydrogenase (lipoamide) alpha 12175-0.2310.2646No
72IDH3BIDH3B
Entrez,  Source
isocitrate dehydrogenase 3 (NAD+) beta2270-0.2920.2393No
73IDH3AIDH3A
Entrez,  Source
isocitrate dehydrogenase 3 (NAD+) alpha2363-0.3420.2152No
74CSCS
Entrez,  Source
citrate synthase2430-0.4000.1994No
75NNTNNT
Entrez,  Source
nicotinamide nucleotide transhydrogenase2588-0.5300.1576No
76PDK1PDK1
Entrez,  Source
pyruvate dehydrogenase kinase, isozyme 12596-0.5350.1611No
77SDHASDHA
Entrez,  Source
succinate dehydrogenase complex, subunit A, flavoprotein (Fp)2617-0.5600.1608No
78ETFAETFA
Entrez,  Source
electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II)2767-0.6920.1231No
79ACO2ACO2
Entrez,  Source
aconitase 2, mitochondrial2852-0.7940.1060No
80UQCRHUQCRH
Entrez,  Source
ubiquinol-cytochrome c reductase hinge protein2908-0.8520.0983No
81IDH1IDH1
Entrez,  Source
isocitrate dehydrogenase 1 (NADP+), soluble3060-1.0870.0641No
82CYCSCYCS
Entrez,  Source
cytochrome c, somatic3167-1.2780.0454No
83ATP5IATP5I
Entrez,  Source
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E3378-2.4260.0072No
Table: GSEA details [plain text format]



Fig 2: REACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT: Random ES distribution   
Gene set null distribution of ES for REACTOME_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT