Datasetchrom
PhenotypeNoPhenotypeAvailable
Upregulated in classna_pos
GeneSetREACTOME_CELL_CYCLE_CHECKPOINTS
Enrichment Score (ES)0.443838
Normalized Enrichment Score (NES)1.7195327
Nominal p-value0.0016556291
FDR q-value0.031762637
FWER p-Value0.405
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME_CELL_CYCLE_CHECKPOINTS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TP53TP53
Entrez,  Source
tumor protein p53 (Li-Fraumeni syndrome)143.0440.0593Yes
2MCM2MCM2
Entrez,  Source
MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)592.3260.0947Yes
3MCM3MCM3
Entrez,  Source
MCM3 minichromosome maintenance deficient 3 (S. cerevisiae)702.2230.1381Yes
4MCM6MCM6
Entrez,  Source
MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)792.1700.1809Yes
5ORC1942.0800.2202Yes
6MCM4MCM4
Entrez,  Source
MCM4 minichromosome maintenance deficient 4 (S. cerevisiae)1052.0440.2598Yes
7MCM5MCM5
Entrez,  Source
MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)1371.7810.2877Yes
8MCM7MCM7
Entrez,  Source
MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)1691.6220.3122Yes
9RPA2RPA2
Entrez,  Source
replication protein A2, 32kDa2341.4210.3226Yes
10PSME2PSME2
Entrez,  Source
proteasome (prosome, macropain) activator subunit 2 (PA28 beta)2381.4120.3512Yes
11MAD1L1MAD1L1
Entrez,  Source
MAD1 mitotic arrest deficient-like 1 (yeast)2491.3900.3772Yes
12PSME1PSME1
Entrez,  Source
proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)3401.1830.3749Yes
13RFC4RFC4
Entrez,  Source
replication factor C (activator 1) 4, 37kDa4471.0030.3640Yes
14CDK14720.9770.3771Yes
15PSMB10PSMB10
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 104740.9740.3972Yes
16ATRATR
Entrez,  Source
ataxia telangiectasia and Rad3 related4940.9500.4113Yes
17RFC2RFC2
Entrez,  Source
replication factor C (activator 1) 2, 40kDa5110.9300.4259Yes
18RFC3RFC3
Entrez,  Source
replication factor C (activator 1) 3, 38kDa5940.8510.4191Yes
19PSME4PSME4
Entrez,  Source
proteasome (prosome, macropain) activator subunit 45950.8510.4368Yes
20CHEK1CHEK1
Entrez,  Source
CHK1 checkpoint homolog (S. pombe)6640.7720.4325Yes
21CDK2CDK2
Entrez,  Source
cyclin-dependent kinase 26800.7590.4438Yes
22RFC5RFC5
Entrez,  Source
replication factor C (activator 1) 5, 36.5kDa7640.6850.4332No
23PSMB4PSMB4
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 47800.6740.4427No
24ORC59580.5460.4010No
25ORC39710.5380.4086No
26PSMC3PSMC3
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 310140.5150.4067No
27ANAPC5ANAPC5
Entrez,  Source
anaphase promoting complex subunit 511030.4590.3899No
28PSMB6PSMB6
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 611170.4500.3954No
29PSMA5PSMA5
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 511200.4470.4041No
30CDC27CDC27
Entrez,  Source
cell division cycle 2711690.4190.3984No
31PSMB2PSMB2
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 212430.3790.3844No
32RPA1RPA1
Entrez,  Source
replication protein A1, 70kDa12800.3550.3810No
33ORC212980.3460.3831No
34PSMA6PSMA6
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 613980.2830.3593No
35PSMA3PSMA3
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 314870.2250.3375No
36ANAPC1ANAPC1
Entrez,  Source
anaphase promoting complex subunit 114980.2170.3391No
37CDC16CDC16
Entrez,  Source
CDC16 cell division cycle 16 homolog (S. cerevisiae)15120.2030.3394No
38PSMA4PSMA4
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 415180.2000.3421No
39PSMB1PSMB1
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 115710.1680.3300No
40CDC23CDC23
Entrez,  Source
CDC23 (cell division cycle 23, yeast, homolog)16040.1490.3235No
41PSMB3PSMB3
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 317310.0730.2871No
42RPS27ARPS27A
Entrez,  Source
ribosomal protein S27a17390.0660.2864No
43PSMC6PSMC6
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 617590.0540.2818No
44ANAPC4ANAPC4
Entrez,  Source
anaphase promoting complex subunit 417700.0480.2798No
45PSMC5PSMC5
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 517840.0380.2767No
46PSMA1PSMA1
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 118110.0280.2695No
47PSMD14PSMD14
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1418320.0130.2638No
48BUB3BUB3
Entrez,  Source
BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)1857-0.0040.2566No
49PSMA2PSMA2
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 21911-0.0470.2417No
50PSMC4PSMC4
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 42015-0.1150.2132No
51PSMD6PSMD6
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 62028-0.1270.2122No
52PSMD1PSMD1
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 12033-0.1330.2138No
53PSMD11PSMD11
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 112082-0.1680.2029No
54PSMD2PSMD2
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 22091-0.1750.2041No
55PSMB7PSMB7
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 72141-0.2090.1938No
56MAD2L1MAD2L1
Entrez,  Source
MAD2 mitotic arrest deficient-like 1 (yeast)2160-0.2200.1929No
57PSMC1PSMC1
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 12163-0.2200.1969No
58PSMA7PSMA7
Entrez,  Source
proteasome (prosome, macropain) subunit, alpha type, 72167-0.2230.2007No
59RPA3RPA3
Entrez,  Source
replication protein A3, 14kDa2182-0.2330.2013No
60PSMD3PSMD3
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 32216-0.2560.1968No
61ANAPC7ANAPC7
Entrez,  Source
anaphase promoting complex subunit 72231-0.2670.1981No
62PSMD12PSMD12
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 122232-0.2680.2037No
63PSMD13PSMD13
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 132239-0.2720.2076No
64ANAPC10ANAPC10
Entrez,  Source
anaphase promoting complex subunit 102259-0.2860.2078No
65PSMD7PSMD7
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)2311-0.3120.1990No
66PSMB5PSMB5
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 52356-0.3360.1928No
67PSMD8PSMD8
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 82368-0.3490.1968No
68PSMD4PSMD4
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 42456-0.4260.1796No
69PSMC2PSMC2
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, ATPase, 22509-0.4670.1737No
70PSMB8PSMB8
Entrez,  Source
proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)2639-0.5770.1470No
71CCNB1CCNB1
Entrez,  Source
cyclin B12655-0.5910.1548No
72PSMD10PSMD10
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 103006-0.9920.0703No
73UBE2E1UBE2E1
Entrez,  Source
ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast)3030-1.0260.0848No
74PSMD5PSMD5
Entrez,  Source
proteasome (prosome, macropain) 26S subunit, non-ATPase, 53166-1.2750.0709No
Table: GSEA details [plain text format]



Fig 2: REACTOME_CELL_CYCLE_CHECKPOINTS: Random ES distribution   
Gene set null distribution of ES for REACTOME_CELL_CYCLE_CHECKPOINTS