Hackathon 2020

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Qiu Lab 2nd Hackathon on 2019-2020 Coronavirus Outbreak
Date & time: Saturday, Feb 8, 2020
Location: Belfer Research Building Room 422

Photos

Teams

  • Genome collection: Edgar, Brian
  • Genbank file parsing: Edgar, Lia
  • Manual input of geographic origin and dates: Bing, Desiree, Jerry, Ramen
  • Database and database tools: Saymon and Lia
  • Genome website development: Edgar & Lia
  • Epidemiology model & app development: Brian, Chris, Junho

Links

  1. Zhou et al (2018): https://www.ncbi.nlm.nih.gov/pubmed/32015507
  2. ncoV website from nextstrain: https://nextstrain.org/ncov

GISAID download & preprosess

  1. Step 1
  2. Step 2
    1. Step 2.1
  • Jan 30: Hackathon announced
  • Feb 6
    • Genome sequences downloaded and parsed (Edgar)
    • Database design and population (Lia)