Mini-Tutorals: Revision history

19 July 2023

• curprev 15:5515:55, 19 July 2023‎ Wikiuser talk contribs‎ 50,008 bytes +502‎ →‎Ggplot2 tips

15 June 2023

• curprev 20:4520:45, 15 June 2023‎ Wikiuser talk contribs‎ m 49,506 bytes +1‎ →‎=Run batch contingency table tests
• curprev 20:4520:45, 15 June 2023‎ Wikiuser talk contribs‎ m 49,505 bytes +845‎ →‎R tips

1 September 2022

• curprev 15:4515:45, 1 September 2022‎ imported>Weigang‎ m 48,660 bytes +382‎ No edit summary

13 March 2022

• curprev 13:3913:39, 13 March 2022‎ imported>Weigang‎ m 48,278 bytes +11‎ →‎Tree visual with ggtree

11 March 2022

• curprev 20:0120:01, 11 March 2022‎ imported>Weigang‎ m 48,267 bytes +33‎ →‎Tree visual with ggtree
• curprev 20:0020:00, 11 March 2022‎ imported>Weigang‎ m 48,234 bytes +1‎ →‎Tree visua with ggtree
• curprev 19:5919:59, 11 March 2022‎ imported>Weigang‎ m 48,233 bytes +89‎ →‎Tree visua with ggtree
• curprev 19:5519:55, 11 March 2022‎ imported>Weigang‎ m 48,144 bytes +33‎ →‎Tree visua with ggtree
• curprev 19:5319:53, 11 March 2022‎ imported>Weigang‎ m 48,111 bytes +2‎ →‎Tree visua with ggtree
• curprev 19:5219:52, 11 March 2022‎ imported>Weigang‎ m 48,109 bytes +1‎ →‎Tree visua with ggtree
• curprev 19:5219:52, 11 March 2022‎ imported>Weigang‎ m 48,108 bytes 0‎ →‎Tree visua with ggtree
• curprev 19:5019:50, 11 March 2022‎ imported>Weigang‎ m 48,108 bytes +541‎ No edit summary

24 February 2022

• curprev 21:5621:56, 24 February 2022‎ imported>Weigang‎ m 47,567 bytes +168‎ →‎Github for sharing data and source code

21 January 2022

• curprev 16:2416:24, 21 January 2022‎ imported>Weigang‎ m 47,399 bytes +34‎ →‎multiple regression models (with broom::tidy)

11 September 2021

• curprev 17:3517:35, 11 September 2021‎ imported>Weigang‎ m 47,365 bytes −3‎ →‎IQ-Tree
• curprev 16:4116:41, 11 September 2021‎ imported>Weigang‎ m 47,368 bytes +71‎ →‎IQ-Tree
• curprev 16:3916:39, 11 September 2021‎ imported>Weigang‎ m 47,297 bytes +22‎ →‎Programs for producing phylogeny & phylogenetic analysis
• curprev 16:3416:34, 11 September 2021‎ imported>Weigang‎ m 47,275 bytes +53‎ →‎IQ-Tree
• curprev 15:5515:55, 11 September 2021‎ imported>Weigang‎ m 47,222 bytes +3‎ →‎IQ-Tree
• curprev 15:5515:55, 11 September 2021‎ imported>Weigang‎ m 47,219 bytes +4‎ →‎IQ-Tree
• curprev 15:5515:55, 11 September 2021‎ imported>Weigang‎ m 47,215 bytes +121‎ →‎IQ-Tree
• curprev 15:5215:52, 11 September 2021‎ imported>Weigang‎ m 47,094 bytes +241‎ →‎IQ-Tree

28 August 2021

• curprev 16:0616:06, 28 August 2021‎ imported>Weigang‎ m 46,853 bytes +7‎ →‎Github for code and file sharing
• curprev 15:5415:54, 28 August 2021‎ imported>Weigang‎ m 46,846 bytes +537‎ →‎github
• curprev 15:4715:47, 28 August 2021‎ imported>Weigang‎ m 46,309 bytes +23‎ →‎github
• curprev 15:4715:47, 28 August 2021‎ imported>Weigang‎ m 46,286 bytes +342‎ →‎github
• curprev 00:0600:06, 28 August 2021‎ imported>Weigang‎ m 45,944 bytes +90‎ →‎bcftools pipeline

19 August 2021

• curprev 22:3122:31, 19 August 2021‎ imported>Weigang‎ m 45,854 bytes +15‎ →‎ospC amplicon identification
• curprev 22:2922:29, 19 August 2021‎ imported>Weigang‎ m 45,839 bytes −745‎ →‎ospC amplicon identification
• curprev 22:2522:25, 19 August 2021‎ imported>Weigang‎ m 46,584 bytes −28‎ →‎ospC amplicon identification
• curprev 22:2422:24, 19 August 2021‎ imported>Weigang‎ m 46,612 bytes −128‎ →‎ospC amplicon identification
• curprev 18:4218:42, 19 August 2021‎ imported>Weigang‎ m 46,740 bytes +21‎ →‎ospC amplicon identification
• curprev 18:3918:39, 19 August 2021‎ imported>Weigang‎ m 46,719 bytes +152‎ →‎ospC amplicon identification
• curprev 17:2917:29, 19 August 2021‎ imported>Weigang‎ m 46,567 bytes +126‎ →‎ospC amplicon identification

6 April 2021

• curprev 21:2021:20, 6 April 2021‎ imported>Weigang‎ m 46,441 bytes +355‎ No edit summary

15 February 2021

• curprev 18:2918:29, 15 February 2021‎ imported>Weigang‎ m 46,086 bytes −1‎ →‎multiple regression models (with broom::tidy)
• curprev 18:2818:28, 15 February 2021‎ imported>Weigang‎ m 46,087 bytes +236‎ →‎R tips

14 February 2021

• curprev 15:1315:13, 14 February 2021‎ imported>Weigang‎ m 45,851 bytes −1‎ →‎multiple regression models (with nested dataframe)
• curprev 15:1215:12, 14 February 2021‎ imported>Weigang‎ m 45,852 bytes +1,024‎ →‎multiple regression models

3 January 2021

• curprev 15:5015:50, 3 January 2021‎ imported>Weigang‎ m 44,828 bytes +303‎ →‎multiple regression models
• curprev 15:4415:44, 3 January 2021‎ imported>Weigang‎ m 44,525 bytes +50‎ →‎multiple regression models

24 November 2020

• curprev 16:4616:46, 24 November 2020‎ imported>Weigang‎ m 44,475 bytes +320‎ No edit summary

10 March 2020

• curprev 19:3519:35, 10 March 2020‎ imported>Weigang‎ m 44,155 bytes +89‎ →‎genome alignment with MUMMER4
• curprev 15:2915:29, 10 March 2020‎ imported>Weigang‎ m 44,066 bytes +94‎ →‎genome alignment with MUMMER4
• curprev 02:3802:38, 10 March 2020‎ imported>Weigang‎ m 43,972 bytes +154‎ →‎genome alignment with MUMMER4

9 March 2020

• curprev 18:5118:51, 9 March 2020‎ imported>Weigang‎ m 43,818 bytes +221‎ No edit summary

28 February 2020

• curprev 19:0019:00, 28 February 2020‎ imported>Weigang‎ m 43,597 bytes +121‎ →‎Variant call with samtools/bcftools & variant verification using IGV

26 February 2020

• curprev 05:2205:22, 26 February 2020‎ imported>Weigang‎ m 43,476 bytes +897‎ →‎Variant verification using IGV

20 February 2020

• curprev 16:4016:40, 20 February 2020‎ imported>Weigang‎ m 42,579 bytes +56‎ →‎genome alignment with MUMMER4
• curprev 16:3916:39, 20 February 2020‎ imported>Weigang‎ m 42,523 bytes +423‎ No edit summary

1 February 2020

• curprev 18:4418:44, 1 February 2020‎ imported>Weigang‎ m 42,100 bytes +247‎ →‎hmmer

6 January 2020

• curprev 21:1221:12, 6 January 2020‎ imported>Weigang‎ m 41,853 bytes +2‎ →‎BERT classify
• curprev 21:1121:11, 6 January 2020‎ imported>Weigang‎ m 41,851 bytes +276‎ No edit summary

16 December 2019

• curprev 19:2019:20, 16 December 2019‎ imported>Weigang‎ m 41,575 bytes +56‎ →‎IQ-Tree
• curprev 19:0819:08, 16 December 2019‎ imported>Weigang‎ m 41,519 bytes +69‎ →‎Programs for producing phylogeny & phylogenetic analysis
• curprev 18:2618:26, 16 December 2019‎ imported>Weigang‎ m 41,450 bytes 0‎ →‎RaXML

12 December 2019

• curprev 22:2922:29, 12 December 2019‎ imported>Weigang‎ m 41,450 bytes +162‎ →‎Ggplot2 tips

31 May 2019

• curprev 20:0420:04, 31 May 2019‎ imported>Weigang‎ m 41,288 bytes +326‎ →‎1k genome project/VCFTools

4 May 2019

• curprev 14:0814:08, 4 May 2019‎ imported>Weigang‎ m 40,962 bytes +16‎ No edit summary
• curprev 14:0714:07, 4 May 2019‎ imported>Weigang‎ m 40,946 bytes +1,685‎ No edit summary

5 April 2019

• curprev 19:2419:24, 5 April 2019‎ imported>Weigang‎ m 39,261 bytes +1,123‎ No edit summary
• curprev 19:1819:18, 5 April 2019‎ imported>Weigang‎ m 38,138 bytes −32‎ No edit summary

4 April 2019

• curprev 16:1616:16, 4 April 2019‎ imported>Weigang‎ m 38,170 bytes +1,334‎ →‎working with VCF files with vcftools

6 March 2019

• curprev 21:0521:05, 6 March 2019‎ imported>Weigang‎ m 36,836 bytes +331‎ No edit summary

11 February 2019

• curprev 19:5719:57, 11 February 2019‎ imported>Weigang‎ m 36,505 bytes +517‎ No edit summary

10 February 2019

• curprev 20:2720:27, 10 February 2019‎ imported>Weigang‎ m 35,988 bytes +192‎ →‎Capture results in R/GA example

1 February 2019

• curprev 16:3116:31, 1 February 2019‎ imported>Weigang‎ m 35,796 bytes −1‎ No edit summary
• curprev 16:2916:29, 1 February 2019‎ imported>Weigang‎ m 35,797 bytes +4‎ →‎Capture results in R/GA example
• curprev 16:2816:28, 1 February 2019‎ imported>Weigang‎ m 35,793 bytes +857‎ No edit summary

9 November 2018

• curprev 20:0320:03, 9 November 2018‎ imported>Weigang‎ m 34,936 bytes +144‎ →‎ospC amplicon identification

20 June 2018

• curprev 17:4717:47, 20 June 2018‎ imported>Weigang‎ m 34,792 bytes +167‎ →‎NCI Cloud (Seven Bridges)
• curprev 17:3317:33, 20 June 2018‎ imported>Weigang‎ m 34,625 bytes +353‎ →‎NCI Cloud (Seven Bridges)

12 June 2018

• curprev 18:0618:06, 12 June 2018‎ imported>Weigang‎ m 34,272 bytes +100‎ →‎NCI Cloud (Seven Bridges)
• curprev 17:2017:20, 12 June 2018‎ imported>Weigang‎ m 34,172 bytes +89‎ →‎NCI Cloud (Seven Bridges)
• curprev 17:1617:16, 12 June 2018‎ imported>Weigang‎ m 34,083 bytes +417‎ No edit summary

16 May 2018

• curprev 23:3823:38, 16 May 2018‎ imported>Weigang‎ m 33,666 bytes +1,367‎ →‎Population genetics

2 April 2018

• curprev 20:0320:03, 2 April 2018‎ imported>Weigang‎ m 32,299 bytes +70‎ →‎Convert a tree to ultrametric using time estimates
• curprev 20:0020:00, 2 April 2018‎ imported>Weigang‎ m 32,229 bytes +3‎ →‎Convert a tree to ultrametric using time estimates
• curprev 20:0020:00, 2 April 2018‎ imported>Weigang‎ m 32,226 bytes +15‎ →‎Convert a tree to ultrametric using time estimates
• curprev 19:5919:59, 2 April 2018‎ imported>Weigang‎ m 32,211 bytes +2‎ →‎APE
• curprev 19:5919:59, 2 April 2018‎ imported>Weigang‎ m 32,209 bytes +188‎ →‎APE

23 February 2018

• curprev 16:3716:37, 23 February 2018‎ imported>Weigang‎ m 32,021 bytes +745‎ No edit summary

19 February 2018

• curprev 03:1703:17, 19 February 2018‎ imported>Lia‎ 31,276 bytes +124‎ →‎PATRIC microbial genome annotation CLI

12 February 2018

• curprev 20:5320:53, 12 February 2018‎ imported>Weigang‎ m 31,152 bytes −8‎ →‎PATRIC microbial genome annotation CLI
• curprev 20:5220:52, 12 February 2018‎ imported>Weigang‎ m 31,160 bytes +50‎ →‎PATRIC microbial genome annotation CLI
• curprev 20:5120:51, 12 February 2018‎ imported>Weigang‎ m 31,110 bytes +732‎ →‎PATRIC microbial genome annotation CLI
• curprev 20:4820:48, 12 February 2018‎ imported>Weigang‎ m 30,378 bytes +208‎ →‎PATRIC microbial genome annotation CLI

10 December 2017

• curprev 08:5308:53, 10 December 2017‎ imported>Weigang‎ m 30,170 bytes +583‎ →‎Transform a wide data frame to a long one
• curprev 08:2808:28, 10 December 2017‎ imported>Weigang‎ m 29,587 bytes +71‎ →‎An R function to transform a wide data frame to a long one
• curprev 08:2608:26, 10 December 2017‎ imported>Weigang‎ m 29,516 bytes +3‎ →‎An R function to transform a wide data frame to a long one
• curprev 08:2508:25, 10 December 2017‎ imported>Weigang‎ m 29,513 bytes +31‎ →‎An R function to transform a wide data frame to a long one
• curprev 08:2508:25, 10 December 2017‎ imported>Weigang‎ m 29,482 bytes +2‎ →‎An R function to transform a wide data frame to a long one

17 November 2017

• curprev 04:1304:13, 17 November 2017‎ imported>Lab‎ 29,480 bytes −1,134‎ No edit summary

14 November 2017

• curprev 23:1023:10, 14 November 2017‎ imported>Lab‎ 30,614 bytes −30‎ No edit summary
• curprev 19:4619:46, 14 November 2017‎ imported>Lab‎ 30,644 bytes +3,960‎ No edit summary

7 September 2017

• curprev 21:3621:36, 7 September 2017‎ imported>Lab‎ 26,684 bytes +12‎ →‎KRAKEN
• curprev 21:3421:34, 7 September 2017‎ imported>Lab‎ 26,672 bytes +186‎ →‎KRAKEN

17 August 2017

• curprev 21:4621:46, 17 August 2017‎ imported>Lab‎ 26,486 bytes +37‎ →‎ospC amplicon identification

9 August 2017

• curprev 23:0923:09, 9 August 2017‎ imported>Weigang‎ m 26,449 bytes +39‎ →‎Variant verification using IGV

3 August 2017

• curprev 17:5117:51, 3 August 2017‎ imported>Weigang‎ m 26,410 bytes +68‎ →‎D3js Tutorial
• curprev 17:4317:43, 3 August 2017‎ imported>Weigang‎ m 26,342 bytes +93‎ →‎D3js Tutorial
• curprev 16:4416:44, 3 August 2017‎ imported>Weigang‎ m 26,249 bytes +152‎ No edit summary

27 July 2017

• curprev 20:1620:16, 27 July 2017‎ imported>Weigang‎ m 26,097 bytes +51‎ →‎Variant verification using IGV

25 July 2017

• curprev 19:1219:12, 25 July 2017‎ imported>Lab‎ 26,046 bytes +2‎ →‎Step 5
• curprev 19:1119:11, 25 July 2017‎ imported>Lab‎ 26,044 bytes +1‎ →‎Step 5
• curprev 19:1119:11, 25 July 2017‎ imported>Lab‎ 26,043 bytes +233‎ →‎Step 5
• curprev 16:5716:57, 25 July 2017‎ imported>Weigang‎ m 25,810 bytes 0‎ →‎An R function to transform a wide data frame to a long one=
• curprev 16:5616:56, 25 July 2017‎ imported>Weigang‎ m 25,810 bytes +342‎ No edit summary

18 July 2017

• curprev 18:2418:24, 18 July 2017‎ imported>Weigang‎ m 25,468 bytes +184‎ →‎Step 6. Parse VCF files
• curprev 18:2018:20, 18 July 2017‎ imported>Weigang‎ m 25,284 bytes +356‎ No edit summary
• curprev 18:1018:10, 18 July 2017‎ imported>Weigang‎ m 24,928 bytes +55‎ →‎Step 6. Parse VCF files
• curprev 18:0918:09, 18 July 2017‎ imported>Weigang‎ m 24,873 bytes +767‎ →‎Step 5

12 July 2017

• curprev 17:5717:57, 12 July 2017‎ imported>Lab‎ 24,106 bytes +154‎ →‎KRAKEN
• curprev 17:5217:52, 12 July 2017‎ imported>Lab‎ 23,952 bytes +125‎ added kraken description
• curprev 17:5017:50, 12 July 2017‎ imported>Lab‎ 23,827 bytes +209‎ added kraken command

2 July 2017

• curprev 11:3011:30, 2 July 2017‎ imported>Weigang‎ m 23,618 bytes +237‎ →‎ospC amplicon identification
• curprev 01:3201:32, 2 July 2017‎ imported>Weigang‎ m 23,381 bytes +248‎ →‎ospC amplicon identification

29 June 2017

• curprev 04:1104:11, 29 June 2017‎ imported>Weigang‎ m 23,133 bytes +111‎ →‎ospC amplicon identification
• curprev 02:5002:50, 29 June 2017‎ imported>Weigang‎ m 23,022 bytes +301‎ →‎ospC amplicon identification

4 May 2017

• curprev 19:0519:05, 4 May 2017‎ imported>Weigang‎ m 22,721 bytes +13‎ →‎PATRIC microbial genome annotation CLI

17 April 2017

• curprev 21:2521:25, 17 April 2017‎ imported>Lab‎ 22,708 bytes +281‎ No edit summary
• curprev 21:2321:23, 17 April 2017‎ imported>Lab‎ 22,427 bytes +187‎ No edit summary
• curprev 21:1621:16, 17 April 2017‎ imported>Lab‎ 22,240 bytes +43‎ No edit summary
• curprev 21:0821:08, 17 April 2017‎ imported>Lab‎ 22,197 bytes +129‎ No edit summary
• curprev 20:5920:59, 17 April 2017‎ imported>Lab‎ 22,068 bytes +334‎ →‎Parsimony reconstruction using MPR
• curprev 20:1520:15, 17 April 2017‎ imported>Lab‎ 21,734 bytes +383‎ →‎Parsimony reconstruction using MPR

11 April 2017

• curprev 21:1121:11, 11 April 2017‎ imported>Lab‎ 21,351 bytes −1‎ →‎Parsimony reconstruction using MPR
• curprev 21:1021:10, 11 April 2017‎ imported>Lab‎ 21,352 bytes +5‎ →‎Parsimony reconstruction using MPR
• curprev 21:1021:10, 11 April 2017‎ imported>Lab‎ 21,347 bytes +374‎ No edit summary

10 April 2017

• curprev 20:3320:33, 10 April 2017‎ imported>Lab‎ 20,973 bytes −5‎ →‎ospC amplicon identification
• curprev 17:4217:42, 10 April 2017‎ imported>Lab‎ 20,978 bytes +481‎ →‎ospC amplicon identification
• curprev 17:2117:21, 10 April 2017‎ imported>Lab‎ 20,497 bytes +81‎ No edit summary

25 October 2016

• curprev 19:1919:19, 25 October 2016‎ imported>Weigang‎ m 20,416 bytes +7‎ →‎RaXML
• curprev 19:1219:12, 25 October 2016‎ imported>Weigang‎ m 20,409 bytes +4‎ →‎RaXML
• curprev 19:1019:10, 25 October 2016‎ imported>Weigang‎ m 20,405 bytes +991‎ →‎RaXML
• curprev 18:2318:23, 25 October 2016‎ imported>Weigang‎ m 19,414 bytes +122‎ →‎RaXML
• curprev 18:1618:16, 25 October 2016‎ imported>Weigang‎ m 19,292 bytes 0‎ →‎RaXML
• curprev 18:1518:15, 25 October 2016‎ imported>Weigang‎ m 19,292 bytes +23‎ →‎RaXML
• curprev 18:1418:14, 25 October 2016‎ imported>Weigang‎ m 19,269 bytes +621‎ →‎RaXML

9 June 2016

• curprev 16:4916:49, 9 June 2016‎ imported>Lab‎ 18,648 bytes +2‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph & Error Cleaning
• curprev 16:4816:48, 9 June 2016‎ imported>Lab‎ 18,646 bytes +8‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph & Error Cleaning
• curprev 16:4216:42, 9 June 2016‎ imported>Lab‎ 18,638 bytes +38‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph & Error Cleaning
• curprev 16:4116:41, 9 June 2016‎ imported>Lab‎ 18,600 bytes +54‎ →‎Step 3
• curprev 16:3616:36, 9 June 2016‎ imported>Lab‎ 18,546 bytes +283‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph

8 June 2016

• curprev 21:2821:28, 8 June 2016‎ imported>Lab‎ 18,263 bytes −13‎ →‎Step 3
• curprev 21:2521:25, 8 June 2016‎ imported>Lab‎ 18,276 bytes +36‎ →‎Step 3
• curprev 21:2221:22, 8 June 2016‎ imported>Lab‎ 18,240 bytes −123‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph
• curprev 21:2221:22, 8 June 2016‎ imported>Lab‎ 18,363 bytes −12‎ →‎Step 2. Clean Fastq Files & Run Single-color Graph
• curprev 21:2121:21, 8 June 2016‎ imported>Lab‎ 18,375 bytes −42‎ →‎Step 2. Make single-color graph & clean it

9 May 2016

• curprev 22:0522:05, 9 May 2016‎ imported>Weigang‎ m 18,417 bytes +76‎ →‎Running Velvet Optimizer
• curprev 20:4120:41, 9 May 2016‎ imported>Weigang‎ m 18,341 bytes +118‎ →‎Cleaning
• curprev 19:2319:23, 9 May 2016‎ imported>Lab‎ 18,223 bytes +262‎ →‎Velvet
• curprev 18:3418:34, 9 May 2016‎ imported>Lab‎ 17,961 bytes +554‎ →‎use screen
• curprev 18:1818:18, 9 May 2016‎ imported>Lab‎ 17,407 bytes +48‎ →‎use screen
• curprev 18:1718:17, 9 May 2016‎ imported>Lab‎ 17,359 bytes 0‎ →‎use screen
• curprev 18:1618:16, 9 May 2016‎ imported>Lab‎ 17,359 bytes +47‎ →‎use screen
• curprev 18:1518:15, 9 May 2016‎ imported>Lab‎ 17,312 bytes −15‎ →‎Running a Screen Session
• curprev 18:1318:13, 9 May 2016‎ imported>Lab‎ 17,327 bytes +19‎ →‎Velvet
• curprev 18:1318:13, 9 May 2016‎ imported>Lab‎ 17,308 bytes +18‎ →‎use screen
• curprev 18:1218:12, 9 May 2016‎ imported>Lab‎ 17,290 bytes +228‎ →‎Bp-utils: sequence, alignment & tree utilities by Qiu Lab
• curprev 17:4517:45, 9 May 2016‎ imported>Lab‎ 17,062 bytes +185‎ →‎Velvet
• curprev 17:4317:43, 9 May 2016‎ imported>Lab‎ 16,877 bytes +39‎ No edit summary

22 April 2016

• curprev 22:0222:02, 22 April 2016‎ imported>Lab‎ 16,838 bytes +49‎ →‎MUGSY
• curprev 22:0222:02, 22 April 2016‎ imported>Lab‎ 16,789 bytes +180‎ →‎MUGSY
• curprev 21:5721:57, 22 April 2016‎ imported>Lab‎ 16,609 bytes +317‎ →‎MUGSY
• curprev 21:5621:56, 22 April 2016‎ imported>Lab‎ 16,292 bytes −267‎ →‎MUGSY
• curprev 21:5521:55, 22 April 2016‎ imported>Lab‎ 16,559 bytes +267‎ →‎MUGSY
• curprev 21:5421:54, 22 April 2016‎ imported>Lab‎ 16,292 bytes +1‎ →‎MUGZY
• curprev 21:5321:53, 22 April 2016‎ imported>Lab‎ 16,291 bytes +10‎ →‎Programs for producing multiple alignments

19 April 2016

• curprev 20:4220:42, 19 April 2016‎ imported>Lab‎ 16,281 bytes 0‎ →‎Step 5
• curprev 20:4220:42, 19 April 2016‎ imported>Lab‎ 16,281 bytes +69‎ →‎Step 5

23 March 2016

• curprev 15:4715:47, 23 March 2016‎ imported>Weigang‎ m 16,212 bytes −1‎ →‎PopGenome
• curprev 15:4515:45, 23 March 2016‎ imported>Weigang‎ m 16,213 bytes +1,099‎ No edit summary

25 February 2016

• curprev 19:5319:53, 25 February 2016‎ imported>Weigang‎ m 15,114 bytes +329‎ →‎Annotate proteins with TIGRFAM
• curprev 18:5218:52, 25 February 2016‎ imported>Weigang‎ m 14,785 bytes +278‎ →‎Variant call with cortex_var

5 February 2016

• curprev 16:1316:13, 5 February 2016‎ imported>Lab‎ 14,507 bytes +202‎ →‎Step 1

29 January 2016

• curprev 18:2918:29, 29 January 2016‎ imported>Lab‎ 14,305 bytes −11‎ →‎Variant call with cortex_var

27 January 2016

• curprev 22:3322:33, 27 January 2016‎ imported>Lab‎ 14,316 bytes −1‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:3122:31, 27 January 2016‎ imported>Lab‎ 14,317 bytes −1‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:1222:12, 27 January 2016‎ imported>Lab‎ 14,318 bytes −1‎ →‎Step 3
• curprev 20:4920:49, 27 January 2016‎ imported>Lab‎ 14,319 bytes −1‎ →‎Step 3

26 January 2016

• curprev 23:4923:49, 26 January 2016‎ imported>Lab‎ 14,320 bytes −182‎ →‎Variant call with cortex_var
• curprev 23:0823:08, 26 January 2016‎ imported>Lab‎ 14,502 bytes −20‎ →‎Step 6
• curprev 23:0123:01, 26 January 2016‎ imported>Lab‎ 14,522 bytes −5‎ →‎Step 6
• curprev 22:5922:59, 26 January 2016‎ imported>Lab‎ 14,527 bytes −1‎ →‎Step 6
• curprev 22:5822:58, 26 January 2016‎ imported>Lab‎ 14,528 bytes +17‎ →‎Step 5
• curprev 22:5722:57, 26 January 2016‎ imported>Lab‎ 14,511 bytes −64‎ →‎Step 3
• curprev 22:5422:54, 26 January 2016‎ imported>Lab‎ 14,575 bytes −1‎ →‎Step 3
• curprev 22:4922:49, 26 January 2016‎ imported>Lab‎ 14,576 bytes −3‎ →‎Step 5
• curprev 22:4822:48, 26 January 2016‎ imported>Lab‎ 14,579 bytes +27‎ →‎Step 5
• curprev 22:3922:39, 26 January 2016‎ imported>Lab‎ 14,552 bytes +16‎ →‎Step 4
• curprev 22:3822:38, 26 January 2016‎ imported>Lab‎ 14,536 bytes −8‎ →‎Step 6
• curprev 22:3722:37, 26 January 2016‎ imported>Lab‎ 14,544 bytes −8‎ →‎Step 5
• curprev 22:3722:37, 26 January 2016‎ imported>Lab‎ 14,552 bytes −8‎ →‎Step 3
• curprev 22:3622:36, 26 January 2016‎ imported>Lab‎ 14,560 bytes +32‎ →‎Step 4
• curprev 22:3022:30, 26 January 2016‎ imported>Lab‎ 14,528 bytes +276‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:2122:21, 26 January 2016‎ imported>Lab‎ 14,252 bytes +1‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:2022:20, 26 January 2016‎ imported>Lab‎ 14,251 bytes −1‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:1922:19, 26 January 2016‎ imported>Lab‎ 14,252 bytes −16‎ →‎Step 3
• curprev 22:1822:18, 26 January 2016‎ imported>Lab‎ 14,268 bytes +49‎ →‎Step 2. Make single-color graph & clean it
• curprev 22:1722:17, 26 January 2016‎ imported>Lab‎ 14,219 bytes +330‎ →‎Step 2
• curprev 22:1022:10, 26 January 2016‎ imported>Lab‎ 13,889 bytes −19‎ →‎Step 3

25 January 2016

• curprev 23:2623:26, 25 January 2016‎ imported>Lab‎ 13,908 bytes +24‎ →‎Step 7
• curprev 23:2623:26, 25 January 2016‎ imported>Lab‎ 13,884 bytes +12‎ →‎Step 6
• curprev 23:2523:25, 25 January 2016‎ imported>Lab‎ 13,872 bytes +12‎ →‎Step 5
• curprev 23:2523:25, 25 January 2016‎ imported>Lab‎ 13,860 bytes +12‎ →‎Variant call with cortex_var
• curprev 23:2323:23, 25 January 2016‎ imported>Lab‎ 13,848 bytes 0‎ →‎Step 3
• curprev 23:2223:22, 25 January 2016‎ imported>Lab‎ 13,848 bytes +12‎ →‎Step 4
• curprev 23:0823:08, 25 January 2016‎ imported>Lab‎ 13,836 bytes +135‎ →‎Step 3
• curprev 23:0623:06, 25 January 2016‎ imported>Lab‎ 13,701 bytes +126‎ →‎Step 3
• curprev 23:0023:00, 25 January 2016‎ imported>Lab‎ 13,575 bytes +111‎ →‎Genome annotation pipeline
• curprev 22:5922:59, 25 January 2016‎ imported>Lab‎ 13,464 bytes +5‎ →‎Step 5
• curprev 22:5922:59, 25 January 2016‎ imported>Lab‎ 13,459 bytes +6‎ →‎Step 3
• curprev 22:5722:57, 25 January 2016‎ imported>Lab‎ 13,453 bytes +1‎ →‎Step 1
• curprev 22:5622:56, 25 January 2016‎ imported>Lab‎ 13,452 bytes +1,012‎ →‎Step 1
• curprev 22:0622:06, 25 January 2016‎ imported>Saymon‎ 12,440 bytes +62‎ →‎de novo variant call with cortex_var
• curprev 20:5820:58, 25 January 2016‎ imported>Lab‎ 12,378 bytes +11‎ →‎Step 7
• curprev 20:5720:57, 25 January 2016‎ imported>Lab‎ 12,367 bytes +7‎ →‎Step 6
• curprev 20:5620:56, 25 January 2016‎ imported>Lab‎ 12,360 bytes +3‎ →‎Step 6
• curprev 20:5520:55, 25 January 2016‎ imported>Lab‎ 12,357 bytes +1,633‎ →‎Variant call with cortex_var
• curprev 20:2920:29, 25 January 2016‎ imported>Lab‎ 10,724 bytes +78‎ →‎Step 2
• curprev 20:2120:21, 25 January 2016‎ imported>Lab‎ 10,646 bytes +133‎ →‎Step 2
• curprev 20:1920:19, 25 January 2016‎ imported>Lab‎ 10,513 bytes +91‎ →‎Variant call with cortex_var
• curprev 20:0420:04, 25 January 2016‎ imported>Lab‎ 10,422 bytes +2‎ →‎Step 1
• curprev 20:0020:00, 25 January 2016‎ imported>Lab‎ 10,420 bytes +8‎ →‎Example
• curprev 20:0020:00, 25 January 2016‎ imported>Lab‎ 10,412 bytes −9‎ →‎Example
• curprev 19:5819:58, 25 January 2016‎ imported>Lab‎ 10,421 bytes +1,093‎ →‎Variant call with cortex_var
• curprev 19:5719:57, 25 January 2016‎ imported>Lab‎ 9,328 bytes +267‎ →‎Variant call with cortex_var
• curprev 18:5518:55, 25 January 2016‎ imported>Weigang‎ m 9,061 bytes +417‎ No edit summary

24 November 2015

• curprev 18:1018:10, 24 November 2015‎ imported>Saymon‎ 8,644 bytes +8‎ →‎''de novo'' variant call with cortex_var
• curprev 18:0218:02, 24 November 2015‎ imported>Saymon‎ 8,636 bytes +872‎ →‎de novo variant call with cortex_var
• curprev 17:4117:41, 24 November 2015‎ imported>Saymon‎ 7,764 bytes +1,214‎ →‎Microbial genome databases & pipelines in Qiu Lab

8 July 2015

• curprev 20:5820:58, 8 July 2015‎ imported>Weigang‎ m 6,550 bytes −10‎ →‎interproscan
• curprev 20:5820:58, 8 July 2015‎ imported>Weigang‎ m 6,560 bytes +2‎ →‎interproscan
• curprev 20:5720:57, 8 July 2015‎ imported>Weigang‎ m 6,558 bytes +8‎ →‎interproscan
• curprev 20:5720:57, 8 July 2015‎ imported>Weigang‎ m 6,550 bytes +44‎ →‎interproscan

6 July 2015

• curprev 20:2420:24, 6 July 2015‎ imported>Amanda‎ 6,506 bytes +221‎ →‎cdhit
• curprev 17:3817:38, 6 July 2015‎ imported>Weigang‎ m 6,285 bytes +47‎ →‎interproscan
• curprev 17:3617:36, 6 July 2015‎ imported>Weigang‎ m 6,238 bytes +228‎ →‎Homology searching and clustering

2 July 2015

• curprev 21:4121:41, 2 July 2015‎ imported>Saymon‎ 6,010 bytes +1,549‎ →‎bioaln: alignment/CLUSTALW manipulations
• curprev 12:4012:40, 2 July 2015‎ imported>Weigang‎ m 4,461 bytes −1‎ No edit summary
• curprev 12:3912:39, 2 July 2015‎ imported>Weigang‎ m 4,462 bytes +233‎ No edit summary
• curprev 12:3212:32, 2 July 2015‎ imported>Weigang‎ m 4,229 bytes −1‎ No edit summary
• curprev 12:3112:31, 2 July 2015‎ imported>Weigang‎ m 4,230 bytes +177‎ No edit summary
• curprev 12:2712:27, 2 July 2015‎ imported>Weigang‎ m 4,053 bytes +416‎ No edit summary

26 June 2015

• curprev 04:3404:34, 26 June 2015‎ imported>Saymon‎ 3,637 bytes +59‎ →‎bp-utils: bioaln
• curprev 04:2604:26, 26 June 2015‎ imported>Saymon‎ 3,578 bytes +988‎ →‎bp-utils: bioaln
• curprev 03:0003:00, 26 June 2015‎ imported>Saymon‎ 2,590 bytes +1‎ →‎bp-utils: bioseq

20 June 2015

• curprev 21:4821:48, 20 June 2015‎ imported>Weigang‎ m 2,589 bytes +21‎ No edit summary